| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10007013 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12635 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (72.22%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000635 | Metagenome / Metatranscriptome | 970 | Y |
| F003112 | Metagenome / Metatranscriptome | 506 | N |
| F004760 | Metagenome / Metatranscriptome | 424 | N |
| F010603 | Metagenome / Metatranscriptome | 301 | Y |
| F020886 | Metagenome / Metatranscriptome | 221 | N |
| F035218 | Metagenome / Metatranscriptome | 172 | Y |
| F055684 | Metagenome / Metatranscriptome | 138 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000701310 | F020886 | GGAGG | VSLDEVADLRDKVANVSERLARMEERQMTLISMIERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN |
| Ga0315909_1000701314 | F055684 | AGGAG | MWITNENNIIRQPEGIRIGDVNHPASIFWCWSKEQLAEVGIKPYTPASVPAGYRVTGAYTEEIDGEVFERFNLEAIPQPEPTPEEIVNDIN |
| Ga0315909_1000701315 | F000635 | AGGAG | MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRLITLGSNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDSRTGDPDTYHFTGRNSSGVAELNLYPRLATSGTIPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQTANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA |
| Ga0315909_100070134 | F004760 | AGGA | MPIYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSNYTPDSIKRVALRRK |
| Ga0315909_100070135 | F010603 | AGGAG | MSNELFRSPIKAKNKTVRIISTPFENVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS |
| Ga0315909_100070138 | F035218 | AGGAG | MPLVKNPSNIDNFLFASGRMKMYRAGLAGSYTRVTGTGGVASLANTGGFHMNINAGSSASGTSKVGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNSTDAPLAGVNGLTIKGFGVEFALQSSVIQARLIGFNASYLTPTSYTTLTNGFGLAASDNRFFGVVIESDGAGNIYLYGADSSINPNINIGQAPLLTLTGGPTNDTSTNRFGPEIHCSNSSSSPTASPSAILQSTHWLLDVQ |
| Ga0315909_100070139 | F003112 | GAG | MTAQEYACFKEALKFAVENNNIAKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEVVDAVVHLAVALKYLEGKGRES |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |