| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10006825 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12836 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009265 | Metagenome / Metatranscriptome | 320 | Y |
| F009526 | Metagenome / Metatranscriptome | 316 | N |
| F009679 | Metagenome / Metatranscriptome | 314 | Y |
| F029096 | Metagenome | 189 | Y |
| F048270 | Metagenome | 148 | Y |
| F058100 | Metagenome / Metatranscriptome | 135 | N |
| F090105 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000682512 | F090105 | N/A | MRWFADSPLASFIRVFGAGVLGWVLINADTLKIHPALVIGLVSALPIIINWLNPEYKNYGKGHQE |
| Ga0315909_1000682514 | F048270 | N/A | MTQILVAGQLAAALIAILSLGGILVKWGIVKPIKAYIDTMTYAIQPYANGGKSLPDLIEKVDALHLVVQNHIDTRHDTPISTKCLCDSDARA |
| Ga0315909_1000682518 | F058100 | GAG | MMMDNKDAMYISILKKLYGAYEALPYFAESCEICSETLHPEDIGVDPYTNTRTWMTKCCGEIQTYQQKLEPQI |
| Ga0315909_100068253 | F009679 | AGGA | MALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVAINAVSLTNNVARFYCYDNTFVVGQALTVTGCGSPFNGSRTVTKEGVDEYGVTFFEAAITNADITKRNIIPSGRAVLTSQAALYDTIPEVRESAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG |
| Ga0315909_100068255 | F009526 | AGG | MPATYITGRNLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAANSAPDTSLPFSFDVNGDTFTGSVFPVFPTVGGAATDVLTTSLSFVVEDGTVARA |
| Ga0315909_100068256 | F009265 | AGG | MQYEVTTQQGNKYIVSDDSAWLWVEIERELGYTMHQAAEKMSQGSLDVITCMLYKAAKSAGQTKLPSQQAWVINEFDTFEVVEESPKES |
| Ga0315909_100068257 | F029096 | GAG | MVMAETRETIKIQPDMRDLRDTLKALNRMDKEANLELKDDVQSITMWMAQIIQQAGFAHRVYPKQAAIVARTVRGNRDRIPSVTIGGSKGRASGGANAGQLLFGNEFGGDRNAYGNLNAFPNGGFRFPPRTDREGRGNVGYWIFPTLKDNQTELTDKWKAAVQRVFDKWGSPN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |