Scaffold Ga0315320

Basic Information
Taxon OID	3300031851 Open in IMG/M
Scaffold ID	Ga0315320_10000360 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031851 Open in IMG/M

Scaffold ID

Ga0315320_10000360 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36799
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (27.27%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

36799

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (27.27%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F005010	Metagenome	415	Y
F005132	Metagenome / Metatranscriptome	411	Y
F008384	Metagenome	334	Y
F010877	Metagenome / Metatranscriptome	298	Y
F016593	Metagenome / Metatranscriptome	246	Y
F016811	Metagenome / Metatranscriptome	244	Y
F024348	Metagenome / Metatranscriptome	206	Y
F027314	Metagenome / Metatranscriptome	195	Y
F032817	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_1000036011	F024348	AGCAG	LTQRKLIGYARPTNMLFEEHYEDLTDAEANLILDIYRVIDELVYFGEPVTLVRLGFELGIRPDELSDYLAIIVTILNKVEEEYAEIRQGSN
Ga0315320_1000036012	F008384	GAGG	MPRYDKALIEEEAFKSVEQGCLTEELGAFILQRAIEISGSAFVTDGNKELKQALIDSAVMRTCEKFLHYYQSGKSAANLVISIIYSTMTNKIVSLNHSDVYGHNIKGYVVSIEDGEKKIRLVRYTKDNYLSEKL
Ga0315320_1000036016	F005132	N/A	MVDVIFIDDNYLYQNFPLPKRMDRGALLSLIQLEQFTSIQDLLGSCLYEDIEAKVLAETLSTSEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISSTIDSKLSYINKRITNYILDNPILKAVATADGCDNDLFDAQDTYQSDVFYPQDGVTDKSCEDGGVTYDY
Ga0315320_1000036018	F016593	AGGA	MKRLKTGVVNTLSFVKLSTFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDIEGGEYELTITNSGESYKYLTEVQDYTVTQTGTGIYGSTVRFTDL
Ga0315320_1000036027	F032817	AGG	MAFNCSILLSDIDINCNKRVTGGIQKVILLLKQDLTITFDPLDETIVTQVDTNNTVVFEHNIKDGVTSFDENKNISNGLGVVSTSIVVQIPSVDNKVNQIDYMSRREDIVAILLHNNESVTISGWMDGLTMNYEANSGTNISEKSFINITLNTESGLASLVLDDKTPFTDQTIFA
Ga0315320_100003603	F005010	GAG	MVLSMIKSYNRKRRHIREVEKYLEMLMLDNVNLSLQASRFGWNDDLQNQLTNSALLIRKYQRRLRLIIM
Ga0315320_1000036030	F027314	N/A	MACNVTLADISYSCDDVAIGGIVELHVANRSDALTALTRTDADREVTAATAVTGVSQISFNNKDGFSVFSEVKTVSGDGVVSTVPTVSVELPKMTADKITALNDISKGGAELVAFVETAAGTYHVCGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDELGLSYSIGAAEFATATA
Ga0315320_1000036031	F004461	N/A	MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDASLTFGSDLCVFNGDSDATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDAEFKDWVFDYFAKLSAEKALTVAGTELTTEMAADAAVLDYALGGAITSANVLDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQAYQIAIAGLYTTTPQGVVEGGVPNYFGMEVIHFPSMPAGQFMISAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGAEIVYAA
Ga0315320_100003604	F016811	N/A	MSDEGQMIYDVGVRLAWKKKRGNGYVNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKKEDYIKEFGE
Ga0315320_1000036042	F010877	N/A	MTQKELMLALAGGGLPKNDVKKEMFKFYNSMVGKSKYFSKQENPKTACGSCIQRVKTSIWKWYHSDEKAPTYSELEFMGRLGAHNIPLYKVVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315320_10000360

Overview

Ecosystem & Geography

Associated Families

Sequences