NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308000_10330802

Scaffold Ga0308000_10330802


Overview

Basic Information
Taxon OID3300031848 Open in IMG/M
Scaffold IDGa0308000_10330802 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024207Metagenome / Metatranscriptome207Y
F058285Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0308000_103308021F058285AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRISSAVDTAGTSATADTFLNVSVNNAEFSKDVSVPALNAGQPFGVL
Ga0308000_103308022F024207N/ARMKPILTQSRRNKSKVRQLVNFMGIEGTANFLSQTIGRTVSPNAVVALLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRTPVRRATSTTLIKN

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