NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315290_10196712

Scaffold Ga0315290_10196712


Overview

Basic Information
Taxon OID3300031834 Open in IMG/M
Scaffold IDGa0315290_10196712 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1751
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014837Metagenome / Metatranscriptome259Y
F024095Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0315290_101967122F014837N/AMIQRTINPKPRFLTLIASVPSTGAFVGAPLGTLFRTSFFTFPQDSILHYVSINSTFVANGAASQVIGSVVYNQGQDSIGYNLGVGVDNFGDGTIWRDELLNPAAGVLTSDKSTQIMMNEFFCHAGTGIGIYVNGLSGNANINATIAFNPIAEWVNFREPTSGARI
Ga0315290_101967123F024095GGCGGMDNTNSLPFVYTVTSSLTNVVGATSSSTLIMQADSRFELMGIMATGGATAASEDNIQYPNFFSVSIRDQTTGRDLMSGPVPQRVLAGNAFRQFLEKRGIIFEPQSNLLFTFTNLQALTCNITLALHGYKMIL
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