NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000838

Scaffold Ga0307478_10000838


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000838 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29217
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001352Metagenome / Metatranscriptome717Y
F007429Metagenome / Metatranscriptome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_1000083819F007429AGGVDAVSCPIVLNAIPMKKKQKPAKKSRPAIKPTAQNERLKGWNEIASFLGQPVAVAQRWARSGMPVTREGRFMHASQEELSGYLGREAGLDVPVHIATENMDLSADLKRALAHARAGKQDKKKRLSDKKGVRFFRSIIAVIVSRSSSPEVLPCGFSFPGSQSSSYGDC
Ga0307478_1000083821F001352GAGMGSFEFYSSPLAGCQDEISELVVVARRLWPRIQAHARREQPEKSSDEALALATEVWEGVLQSVAKTIQRSNRRNWRIKNTEAYLFGAFHHRFNRALRKERTRRETIQCLPSIDLERLRQAHDSTAVRDLEETIQVNEAVRSMDEWTRKVWVVRQYGYSWREIASHLRLTEPQAKLRFRYAIGRLRTRFGRMDVTI
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