NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000063

Scaffold Ga0307478_10000063


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000063 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129568
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (62.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013694Metagenome / Metatranscriptome269Y
F014050Metagenome / Metatranscriptome266Y
F016589Metagenome / Metatranscriptome246Y
F017017Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_1000006313F017017N/AMLKIGQLAQIKADSPYVYEALTQLVNAVNAVGRAAGVDPSGPINPPATIGSLSVTAAGGIFDLSITDNSAVHRGIFYFAESDTTPAFLRPYVHFLGSSRNYRIALGNQTLYWRAYSQYLGSDPSAPVTFGTPPTAVTGGGALAGPPLQLSNGSGTAPGTAGGSGFGELTESVSGPVTLR
Ga0307478_1000006342F013694GGAGMKNLNFLVAAYIAIWLVFCGYLFSVARRMAKLKNEIRRLKQNGK
Ga0307478_100000636F016589N/AMILVLRETHKAPAEAVRELALAGGCNRFGEPNYRAVWGWSRLDWIGGKWEDRDSSGALVREVVELRREPKYAPHNRWHIERWLPPESYGSPAQWHAQTLEIENGRNISALGPYPSRGDYEHCFTLEGPSGEFVQLTPTAARHIARAIEASRGTARPKRREALEQRTLREERQYDAFAEAVLA
Ga0307478_100000639F014050GGTGGMAAAIAGGANGVITGFAAVGIDPQHFNLQAGLRSTLAIAAVSALMSGIIGVAAYLKQSPLPSGG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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