| Basic Information | |
|---|---|
| Taxon OID | 3300031823 Open in IMG/M |
| Scaffold ID | Ga0307478_10000015 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 270892 |
| Total Scaffold Genes | 253 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 175 (69.17%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000954 | Metagenome / Metatranscriptome | 822 | Y |
| F002102 | Metagenome / Metatranscriptome | 593 | Y |
| F002108 | Metagenome / Metatranscriptome | 592 | Y |
| F003000 | Metagenome / Metatranscriptome | 514 | Y |
| F009817 | Metagenome / Metatranscriptome | 312 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307478_10000015148 | F002108 | GAG | MSQTSAAAAPASSSSKADDQQARPFRVKLRGSVLILIRLPNQRQVRGKLHQLSTTGGLMNVEKPLDEKLKVELIFHLGDTTIREQAEIMFPMWATQGWLQPFRFIELPEARKNALETSLHSFMQPSHDPIA |
| Ga0307478_10000015215 | F009817 | N/A | MINKRLGSILRPRTVFVLAVLLGRCLFGAAQDVSLALLQPGEMQPAAFTPAPRATSVQPVALPEAPSPHRFWDRENSILFATSAAFSAADFVVTRDNLRSGGRELNPVTRLFSGSTPGLAMNFAGETAGVLGVSYLLHKTGHHKMERMVSMLNIGSSAAAVTFDLVHR |
| Ga0307478_10000015248 | F003000 | N/A | MKGDTQLGEMHDRLMDFHRQNPREGLGDALLMWMADPLKPRDEHGRFRVNPILLLLAIVLVLVFGAFLFFSVVWS |
| Ga0307478_10000015251 | F002102 | AGGAG | MLEDEKENRSKRKSGTLDRFEPGCELGAIEDRGEREQRLDSLPTEQKEFAEESTCFADLCQYFAQQKMDIPPSIVERVGSVSKLPESDRIHAMKDINRELMEYLNDVGQDPGIRQ |
| Ga0307478_1000001551 | F000954 | N/A | MALPPSLVKKGLIIIVAVVLAPVLLVGLVAFAGGDWRQVGATAAGDQVLVSSVTAQRNGLRTAWIRVEYKEPATLPQGGPFVELRARVRFNCAGGVAVPIAVANPEWFYSRERGGRLVVSKKMHRDDQFGRSTEGGFGEIARDFVCKQK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |