NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316217_10009285

Scaffold Ga0316217_10009285


Overview

Basic Information
Taxon OID3300031813 Open in IMG/M
Scaffold IDGa0316217_10009285 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8872
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044276Metagenome154Y
F088126Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0316217_100092851F088126GGAGMTTTTQSVSGTAAAQEPKRRGRRPAAASAVTFAYYDATVSPDGSIASIGKPFDSEIDAQKSCARSGKPYLKIETLRVEFVVLDGKLVAIATPAKKQ
Ga0316217_100092859F044276GGAGMVDNSTLTKLRQPVIFSALLVVAAIAVAISARFPIGLIVLRAGVAVFNVLSFFYCLSLVGQKAWEISARIANALRNGGKEASDVECN

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