NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10459469

Scaffold Ga0315900_10459469


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10459469 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)981
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021963Metagenome / Metatranscriptome216Y
F028489Metagenome / Metatranscriptome191Y
F059881Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_104594691F021963N/ANRDAFYLVQSTWLAVCRNCHDWIHAHPAEARTMKWLK
Ga0315900_104594692F028489N/AMNLIGKQLKIKHATDYSKFAILPMNRGIDSKHVQKMIASIRKMGVIRCVITCTTDIIEGVMKTYIIDGQHLATALEREGMAIPYIDIKIESEEDLIEKMALLNNSSKSWDLMNYINAWKMIRPDYMKLFRWKNMYDIEITMLAIIGVNNAGFRHSTSSIKTGEFKITNPLAEKMCKDFNDIFLKIGMSDRAVKFQFLTAFMQAYGKYNHSKVMTNIDKHLKTVKLMANGDDTAAYIRKTIFNLPK
Ga0315900_104594693F059881N/AMNKDEIQAKALEATVGKAMCSVVLGTGVGKTLVGLTHI
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