NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10036509

Scaffold Ga0315900_10036509


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10036509 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5375
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F017290Metagenome / Metatranscriptome241N

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100365095F000468AGGMTVWTPDWKLTVAGVDYTDIAISDIAHQAGRDDIYAQPNPSYLQVQLVALSGQTLPFQINDSLSLQVKNSSGSYVNLFGGDITDLTVEVGATGALATVVNYTILAMGSLVKLAKEIYTGTISQDEDGNQIYDLLSSVLLASWNDVPAATTWATYNATETWANAGNQGLGEIDQPGLYTMENRAADPDTIYNIASLIADSAFGYLYEAPNGDIGYADADHRQTYLLANGYVDLDARHALGAGLSTITRSADIRNDIYINYGNNFGSQEIASSPQSIALYGYKSESINSTIHSAVDAQAVADRYIAQRAFPLAAFQSITFPITNPAIDNSDRDNLLGIFMGQPLNIQNLPTQISNGIFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPITETWQTIDPTLTWEYATIVA
Ga0315900_100365099F017290N/AGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQTMEGEAYKTTNISGTFQLDMLADWGKANSVCEALWTAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVTETFS
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