NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10035887

Scaffold Ga0315900_10035887


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10035887 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5434
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F040587Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100358872F006543GGAGMQKFAFSVDIVATELDRDAIVQSLTAALNDSLPGDVHANVKAGEVKSFSEQGYKVWRARVTGVTADAAGDSANPKKSKKETVEA
Ga0315900_100358875F000325GGAGMKVANGNDKLGKGCLVVSRPVGDTCPPTCVYLGDGCYAEQTEKMYPNVRPAGMMNLITEKNRIRAMILEAIRKEKSIRWHERGDWFLNGELDLDYVANVTWACESILADGISLPDMWFYTHIYDSRLVSFEKYMNVYASVHNNDDMIAAMAQGFKLFAWCDSDEKIAKKRPKRKAAAEVWRKSLPKLVVLNDVKFITCPEIRRGRGVVTCTPTEGSVDCNLCVKGLANVLFPSH
Ga0315900_100358879F040587AGGAMIQWIGVLIALLGFAYTGVKDYQKGDIKIPQVKKVLTPIKHPVQYCLMAYDPNLDKVFYLHENGQWHDYAPQQRRYASTTQPQHY
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