NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10016823

Scaffold Ga0315900_10016823


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10016823 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8687
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F006619Metagenome / Metatranscriptome368Y
F022401Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100168231F006619N/ADSDMEADQSTPVVGEPWCSCGSYQRQLSNVSDFASEIEGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVSWWYAPPADHTSDGRFVLLYTNSGAQAPLSHWRTYKPKEIFTQYDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ
Ga0315900_1001682311F022401N/AMDTTQEPIDSIKDWQEWYRKHRIVAQLDQPLITKDSRENMHDTTNATDDTKTMWINKAREHFADTLAEYQYELNGKDFYKAFYQAAVEAMDCAEKEYQRTKELVDMLRYHHLGQD
Ga0315900_100168236F001018N/AMTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCADLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSTDPEFWHTTERELYCVEETITTTKRVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVVQEYSVRSKRIFGEPRVEMVSSEYPGELLPEDSSAD
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