| Basic Information | |
|---|---|
| Taxon OID | 3300031786 Open in IMG/M |
| Scaffold ID | Ga0315908_10004580 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9944 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (13.64%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002259 | Metagenome / Metatranscriptome | 577 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F010159 | Metagenome / Metatranscriptome | 307 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315908_1000458019 | F002259 | AGG | MGMSAQQKMLHVADRLGLTTLKDMQGTTRMVYDSITTAASNFTFFKGASQRAFPLTNIGANGNQFQVDEALLVEKIGFFIPSAADGIAYASAAANIISVKFDLVIGNKTVLKDVSCEFGGEQAFYNDGASASSVIDLEGVGILIPPQVEYYVVAKPFNGDTRTAASVRLGCYLFGTGALLNFNTTI |
| Ga0315908_1000458020 | F006697 | N/A | MANQVQKVAYVDAKLGVGLPGQQTTRVIYDSVNATAGQTFFEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIISNSGTALLSDHLNLNIQVGNQTVIKDFDPSFNATPRGLAFDRLHSGFNSATNLELRLLTDIVIPPQVNFKATLQFANTGILVNEDVTIVLKGYGRIFSAGNSF |
| Ga0315908_1000458021 | F000710 | N/A | MASNINISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKSFEGIKFSSTTSAAPATLINAMQLRITLTINNDVVIDDVCAHDLGASTGAGITSGFPNYIPFPRALTGQDTILLRVTNSSGASQILNAVVFYKNEI |
| Ga0315908_1000458022 | F010159 | N/A | MSWQIPTLIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGISVTGSDQSVIADTVITAPARINWLETQQISFYTGTDFYPFIHHINTECSAIPFTTNASSPDNEIATSYKTIWSIDNSPIARQVYITSTNDVTITHGLIQIATSATSNAIPVTNRTPQGLTYGGSGLVMNTQTNYGPAGTPQQFMQPSPKDYEDFAFGLLPNNADGQAFATPDATNGLWPSNAWSTAFGSIN |
| Ga0315908_100045806 | F003659 | N/A | MPTYSANDVLGRYLIALEDVPVYDLPNGTRIGEIKKGNSTAEVYSYVVRNGQVWWQFDYTIPGQTPGAYYVMQKDGRFRLSQAAGNVNVNPSELPSVDVFPSGGDLKKYAVWGGLGLLAFLLLSRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |