NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315326_10123586

Scaffold Ga0315326_10123586


Overview

Basic Information
Taxon OID3300031775 Open in IMG/M
Scaffold IDGa0315326_10123586 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1692
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053225Metagenome141Y
F054784Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0315326_101235861F054784AGGAGMKLENLGKNQTRLIMQIPDEECDFTWDKDIYFSYGVPVLVVNYRNAIIHETAERYSVTTAKHINQFKRMCNRYDDRGGPIDPAELHGREWQTFLAPESRMRVVAGQC
Ga0315326_101235864F053225AGGAGMRKFSQSIIGQGVTFTKLAKMRDSRGRVDYARQDIDGIVMESDGYLCTVRAWDGGIHSNVENSELKTWAEADRNIEDELSCLV

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