NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315288_10006940

Scaffold Ga0315288_10006940


Overview

Basic Information
Taxon OID3300031772 Open in IMG/M
Scaffold IDGa0315288_10006940 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14364
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (57.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F008401Metagenome334Y
F015724Metagenome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0315288_1000694020F008401N/AMESAKLLTIAQTAELLNCSAGFVRKRIALTESSQSGGWPKGIFVNLQPNGHKSLYRINQDALQDYLKGETEQVKVEETAATVSSF
Ga0315288_1000694023F015724AGGCGGVARKKGSDDFSWGSHQPKKSSFSFKKVEGGSSTHQLSTPMPWRRKFRPDFNLKDFSILFDYNYASLWTRWRRGYELSMYANQAYVGLNYSFRYYTSGVAGTGAALPGICYMYPSTEQDMAMRMVAIRPRDSFNFLDFGYAISSVSLYKPDIYAVQLSSNFGAPISFFTGEVLSDRFNANGTEKTTYNNYTVIGVGAGLNPLTPTFAPIFNTLFISTSPASSWSVIDGTTLASPAISLPTPGDYFTTEMRFGCNCPDYLAREDFNLYKYNLKRKYPYTLPQDMKPGIYDAGTNYEIDRTSPSRDFPGFARDFGFLYVKKVLDLPQYTDSARNYSDPNMFYYAPRWCKHIYASFWSMQQILTKDQPTLTSPWLAQPTDEPLDPKYREQFDLNLVKTTDFYKRQRNLRWWEKYSPSIDTVPIHMMYADMHPTMVKTLNFDTLVSGTTTPMVASGFEMFTLDQFNPFLPPDPTTLQKYDGGTYFNGALVSGGSLTLDGGRYANGVLIPYPSYPSALNGGTY
Ga0315288_1000694024F001215GAGMASTSTNKQPLMVDRPFLRGARITSATTTVNSSNPDFGDLIQLVRVGDIPSEDAALVEDLFVVSNEGYPNRSGVRSASFGIYVYAPNQAAPSTSAPMMVGKFEVGLSGDTEGIILRVELPATNAPTPQVGDTNLARPIEVGKSEGLYLEKGYILCVGYLGNGPAAVSGGLSPSGISIMAQGGFY
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