NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316219_1008903

Scaffold Ga0316219_1008903


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1008903 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6052
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021909Metagenome / Metatranscriptome216N
F039909Metagenome162N
F061455Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0316219_10089031F021909GGAGGMFLTSWVFVIGSLLLLARLVSHTRLFTHAFVETVKPSDPALHAQGTVLGRYQVQIDFGKAAMANGAMQFHYQWKLIQSQSGLRITKEDKEVLDRKIQAYCKHVVEDPTVAAGDHRLLQWF
Ga0316219_10089033F061455GAGGMEPPKKPKVLPLRAITPEEGLMYAREASKRCKIRDYSTSLLDLVTDPIQPHSYKPDANPDDPGRRRLHPVLVSGIVCLGLMFILFLYFSYWQ
Ga0316219_10089034F039909AGTAGGVTPMAHEAGNTFTTIRKIFHRIALLAGPQYAAFLRIRKVEGRLYVSEQNQWFWSPLSGEEQHILTDCQLEELVSPLYVCRTLLLSAQDAMNNLFRQIDSVQAPLTPTWTEPGRRYADEIIISVFHLKGR
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