| Basic Information | |
|---|---|
| Taxon OID | 3300031759 Open in IMG/M |
| Scaffold ID | Ga0316219_1002086 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19366 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (52.38%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F008414 | Metagenome | 333 | Y |
| F017785 | Metagenome | 238 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316219_100208612 | F000934 | AGG | MANLTTILSIAEQVTINDQRFVGQTISRNQRITTSEIITVVPFQFEFKPNDYLLYSQNRQLLANLRQYDKSLTQYLNFGSTGWVNYINYQGQLTPTQIASCTFDTSSAAKNLILTGVPTANPTYYVVRAGDFIQAGQYTYIATDDVICGSSGTVTIPVHRNLIDGPLPSGITAVMGQYGTTQAMGGNTYTGVTFPIILQNYPTYTLIPMTNDSFIKWSGQFKAFEAVL |
| Ga0316219_100208613 | F017785 | N/A | MTTPIVPIQNTNNIRYADFVRVVTPTQTFRFATTPSSLTIPAVDSQPFDGLGQLVGIGKVQRDIKSTANQTTITLIGIDTALLGAVLGQGFKGAQITMWKGFFDNDGNLITTGGTGGLYQYFYGFINTFQISEQWMEEIRMYVGTITVSAANIQMILQNRIVGRFTNDASWEYFTPGDTSMNRVATISTIYYAFGNND |
| Ga0316219_100208617 | F008414 | AGGA | MSQIIIYTNSNGSVSVCVPTGELPINEVLAKDCPAGAIIVDDSTLPQGADSVFFDAWKLNGSTVTVDFPTAQAHKLRDFNAAAVQVAQKRQFNTLAGIANTPDDATFTANLNSGRASIASATTTAELATISNPI |
| Ga0316219_100208618 | F001991 | GGA | MALFSKNTLTQVSGFDNQIIAGELVYNQRTFWNLSFASGGSPVDLTGTTINAQIIRREVSNLQDTRYGLSFDIADYVPEPDPVTLTIVNENPTNGTFTLVIDESAWAIMAFDPELNIAANNPVAFSGRIKISFPASGSTPAQDSIIFLLFLVRSDGVVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |