| Basic Information | |
|---|---|
| Taxon OID | 3300031759 Open in IMG/M |
| Scaffold ID | Ga0316219_1000551 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 50133 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 57 (81.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002539 | Metagenome | 550 | Y |
| F080800 | Metagenome | 114 | N |
| F102438 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316219_100055145 | F080800 | GAGG | MVDRSNLNPTERRQISEVKMLMVKMAQLNIKNIFPSLSIKSEKVHHTKSLSHTRKGSGRKHQQGK |
| Ga0316219_100055151 | F002539 | GAGG | MAKNEYIWTKAGTDITIRWKTRHNWVPPSEQQEYKDKWRYYQNLPIRALDADAREMYEVALQKAKVARIK |
| Ga0316219_100055159 | F102438 | AGGAG | MFDFEKPYKQYEELIERVRQVNEFWLNSVFYSIKEFFKIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |