NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316219_1000496

Scaffold Ga0316219_1000496


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1000496 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53629
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (61.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021237Metagenome / Metatranscriptome219Y
F028402Metagenome / Metatranscriptome191Y
F032569Metagenome179Y
F056283Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0316219_1000496100F056283N/ALVDEQLPKCYTMNIVNNLELKMFETIVDQLVKVTLTNESVKTEFCNGTLFVRTITEAQARKVFHRLSETLGLGKVQVSPIGDTGEYAFDFV
Ga0316219_100049622F032569GGAMIRVNIKDDAFNRAYWNAKRTLPVARLETPRQYGQRWREAFKCRVDPDGSHGPGNITYIFDHDEDYTWFMLKWG
Ga0316219_100049650F028402AGGAGMNTFNFDTLKEALNPAKFIDQAEKNTQAILAYVQPAELSKTLVSFTSDASDFVRAQLSAIESITAIVKTQAEDAVKSFTKAVK
Ga0316219_100049665F021237GAGMFHYDYQWYLTKDKIVLDEELNTDKLGWKSGDLFKFVNVNGRQLLIKIDPLVKFLEDGAAKNEQGS
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