NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316219_1000444

Scaffold Ga0316219_1000444


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1000444 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56720
Total Scaffold Genes98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (84.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F015706Metagenome / Metatranscriptome252Y
F037510Metagenome167N
F079674Metagenome115Y
F094498Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0316219_100044411F037510GGAMIKLTYEHICDGCKKTLDTEVYECSDYPGMEFPKTHRMFSFHWRGLNAQLCKDCAAPLYEAQEQTMKIIIANRDQDILIN
Ga0316219_100044413F001629GAGGMNFNQGKLAEGLVDEVLQIIHNYDDTLYMATVIGCLELVKQQLINDAMEEDND
Ga0316219_100044423F094498N/AMIEDREDAYEDLMKFLEEGESVEGIVFGEYGWGGYGEKENHKVQKKNQGKLMTLAEAEPLMHGWTFYGGYGAPECNAIYVWTNKRIIWVTQYDGSTTLDSAPRDPIDCIPDMPGG
Ga0316219_100044458F015706AGGMNNPIIAYHKKSELRGWSEVCRDSIYWEGWHEFDRSMIEELLKSGEEVITCGWNMYQVIKEAK
Ga0316219_100044473F079674GGAGGMDQNLDFLLREYKDRIDMLEQALARGNATSYEEYKYICGQLRGLEAACGIIIDLKQKVEHLDDE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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