NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10350680

Scaffold Ga0315907_10350680


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10350680 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1201
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067666Metagenome / Metatranscriptome125N
F079966Metagenome / Metatranscriptome115Y
F101033Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_103506801F067666N/AMIGELNMKPIKKGDTYVISYSFYEDECETDPLDVSTYSFKLQAKNTSGTVMIEWLNADFVQINNYTRKVSLTPVTTATYTAGEYTYELEV
Ga0315907_103506802F101033N/AMEANFWLVLGIQTIAFGLGAIRLYTDMKIKLREHDLRLKTLEKKEDETAIQFKEIMQALNEIKLELKDKADKP
Ga0315907_103506803F079966N/AMADVLKTEGLVIAVTNASGNVYPFACAKNSTITINKDFLELAPKTNSVFREFISARESFTVSGSGLIKMSQSNMQPITFFDNFIEGLDTTSFVCYLDMIDPQGNYKVYKFSAFIQDLTLNSTYGGVPTYTFTLQGTGPLTEITTVDSYTVASGNITGRNPATFKLVAVGIEGTWYYNYTVTGTSPNFVISIGSSFNGKVVKAVYIAL
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