NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10180371

Scaffold Ga0315907_10180371


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10180371 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1777
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019798Metagenome / Metatranscriptome227N
F025224Metagenome / Metatranscriptome202Y
F028490Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_101803712F025224AGGMADVSWMPGSLFDNIDKFANSLGYQNAGIAMELAMMSWKSTEDRDAFITSITGQDPQGGTEKNYIKRNY
Ga0315907_101803713F028490AGGAGGMAGNENSGGYRPNAPQNNPANVSGTGGAGQSGNYTGFAYGENQALNNQRMEGNQAVATTQAATPSAPAAPYEGINMPQLGTLFDPTTRPDEPITAGVDFGPGPGSEVLSKGLMNNARADENARIAAQYLPDLAFAARSPDAPDSFKRFVNYLVENSQGVNPNG
Ga0315907_101803714F019798AGGMTTLVAIQGDGWSVLGCDSRLSDDNGRFQVSKTPKIVENNSVLIAGCGSSRASNILHYGYKQPKPTAQEDLNAYMTQKFIPEMRKNFIDAGIDMKEDGDVAQIDGGFLVSVKGQVFSVSEDYSWDTDIRNVYVMGSGGDVALGALAALGVEKVKTINQAETMIRKAIAIAIQYDNMCSEPIHIFRQFK
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