NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10109476

Scaffold Ga0315907_10109476


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10109476 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2364
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038233Metagenome / Metatranscriptome166Y
F073559Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_101094763F073559N/AMEKISLKLFEFYNLEAELNGMTNQSTGEKLSSGLLQEKLSLVTKYWLTDLAKKVTAEKNAVEELKNDLIKKYGKADPNGSISIPMVIDEVDADGNLVKDVDAEGKESLRKKLNPDFQQFEKEFNELLQTEKEIEYKTIKIEDFEKVETSENYVTFFKLIKVEDTPVVPMPAK
Ga0315907_101094764F038233N/AMALKITSQIGTDKGITSEAYVRIADYQISKSGSAGFRIEIFQSEADVPSVTSLAPSPANKTARNQQIGENLWVPLTKEIDITSTHKQMVPVQIQEEIEIAGPDDENGNPTTVVQTSTRVEMQEQDVEVNHKRVIPDLTPAEGVDIFAFGYGKLKAKLVELFGADNVVDC
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