NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10076593

Scaffold Ga0315907_10076593


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10076593 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2889
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013525Metagenome / Metatranscriptome270Y
F024771Metagenome204N
F032656Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100765931F013525N/AKVMEDFALKNPDTIKQELDSISEEMSNALYTFRRCEEFKKITFSQLTLTKKLEKNCSVSEAEKWAYADDNYATLVEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTNRELSR
Ga0315907_100765933F024771N/AMNEKNYIQNFNHESYENRTKNYLNISEDRFVQYCNSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKAFPDYFVYAPKEAHKQEQFFVELKNATWEHGKTLAKIKVRDVKRYIYFEQAFTNYHTKFTICFPLADKIIFKSVDQILKLLPKSQLKSFPNDGIEYFEVQLS
Ga0315907_100765934F032656N/AMNFYLITYAISFVKVNDESIKEDIAHCRFFDTGSFVNASSFLASLKQVKKLRITGVEFEVEECGWYDYYEDISNTIH
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Biomedical Sciences Research Center "Alexander Fleming"
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