NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10063130

Scaffold Ga0315907_10063130


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10063130 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3226
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y
F074789Metagenome119Y
F102590Metagenome101N
F103133Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1006313012F074789N/AMQSTIETFRALESDGQVRLRALPETDSWFDIYGEPDSAQERQEIIDQIDRNGCWFVESEFYADGAWHHADSVGMCVGYENPLDPAENCYVEDLMRAAIDALEMQSTEGALI
Ga0315907_100631302F001964GGAGMSRNLFAPPKFKVQISGAIGWSDLKERVVSFKTVEFRTRKEAEQAARDLNPGEYTQGRLRVVPVEMPEDYDVYPIPERTKANP
Ga0315907_100631303F002227N/AMKLTIQSKQNAQTIIDLFNAVITGEVQEHGAQPLSIYDEEKHICSIVAANGSQILELIIEREDGDRIVQQGEPETL
Ga0315907_100631307F102590N/AMRTEQFTPGPWRTTGVNVRAGDALICWATNHHANAETPEPEKLANARLIAAAPDLLLALERLTHPMADDEDLSFARDCIANARGK
Ga0315907_100631308F103133AGGAMRYKIQIETYNGGWSDLRESSNGGPYEVCLFPTRMAAVQARAEFNELAEYLEGMRIVPAETPETENIYA
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Institute for Fundamental Biomedical Research
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