NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10059880

Scaffold Ga0315907_10059880


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10059880 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3321
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F002038Metagenome / Metatranscriptome600Y
F004790Metagenome / Metatranscriptome423Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100598801F002038N/APLEARRMNNLPKGIATIAKTVPGQYALLLFLDGYPYVELTARKHADFLTDLNAWKRKTYSSLARSDVRFFTLAPTGEIKELTFTSR
Ga0315907_100598805F001338N/AMEHQNERPPLKSIEVNGTYKLKLIKPKFEKVKHNEDGTSSARLFFLDDQGNCLSKSYGSKYAKPLAMLIGKFSGKFTEELRLDATPAEFMTYCEPAFGKTCLVGVEAIPNGEWNGKPQFKYKLTFPKGGQKPIVPESHTEAPPF
Ga0315907_100598807F004790N/AMEALTAETIAWGRRIGISPERMAFLASCPKFTVSHGHRKSERAVEDNPNHHLQRLGDCYWFRLRRRGKDIVENIGKDLATARKRRDEMLEAFDAGKPLPYLSK
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