| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10038878 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4241 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002827 | Metagenome / Metatranscriptome | 527 | Y |
| F005146 | Metagenome / Metatranscriptome | 410 | Y |
| F006743 | Metagenome / Metatranscriptome | 365 | Y |
| F026539 | Metagenome / Metatranscriptome | 197 | Y |
| F052570 | Metagenome / Metatranscriptome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_100388781 | F026539 | N/A | SGPSYPMTETHPSAGDIVFSVARTIFSRYRNFVEREDVVQECWSWYYSRAEHFNQLLSEENTVQRVINEKRMAWQMKRHAERYARREKATRSGYKLTDEAFYDTVVIAQLLPHVIASVVDNTVLEQAQNLINDGQPKKQSAPAEGGNLLATLIDIKKAYLKLDVMDKDILIKRYHENLTLQELATYLECATSTADRRCQNSLRRLQNNLGGESPYQ |
| Ga0315907_1003887812 | F052570 | GGAG | MPKMKYKLPKGVELEILDDDAHRKDRQDSAFYTWYDSNNVAYLTYEDREYSITCVGEMRIHYKNQVIRYCDDLVNAGIKNDKDLAKIDKAGGEWINNSWFEVYDEINNDYTGEVYHTVQDAIESVAERIVKEEVNA |
| Ga0315907_100388783 | F006743 | GGA | MRTENWQSNMRGLRLVGEAESGSASTTFGPVRAGLTTTHRTQQAQLSELLNCLEREVESLHSKYCEAYVTLTSVMEHLVKLSAIIINETIIDKEKDT |
| Ga0315907_100388785 | F005146 | AGGAGG | MKLINFYEVMDRKGDIAWGGASAREAVAWFRRGFNNSIFVSVWNEEDTEEPVLVTDKIDVTNLLLALLLSEREELYPPKPKKEWVWK |
| Ga0315907_100388787 | F002827 | AGGA | MNKEYYQAKADLCQKLAIQQMTEGDNKEAGANLIRMVNALNELNLINYKEEKNNG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |