NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10013309

Scaffold Ga0315907_10013309


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10013309 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7962
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008081Metagenome / Metatranscriptome339Y
F014605Metagenome / Metatranscriptome261N
F024318Metagenome206Y
F034898Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001330911F008081N/AMEENQVLNPFGYGNASRVIDENRKPADWWNEYFEFNEVFAENEFYVLFSDGLLVKKGRSKFSTSQYLKGERFTSFKKVYERS
Ga0315907_1001330916F024318N/AMKYLGKEIQRPNDLAPKGVRSTYQTEKLTFNETFERLWLLRNLKK
Ga0315907_1001330921F034898N/AMDGLTKEQIVKELQFRATQKYLIYLALQEIMLDNYEDCTFLKHYDHDLTVKHKNIINSLQRNATKAFRFLEDYDEGEATIKQFHDFVKLFERIHESIDWGGSVYTDCLAAVEQIINDYEKANTN
Ga0315907_100133093F014605N/AMKVNLAIEIKDIEGNAIQGEPMLLSKLVGNALFTAEEKDDPIRVYELAKKIYYSDGEIEMTKSDADLIKDKVKGKGFTVLVLAPLFEALSEK
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