| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10013261 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7985 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (35.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002621 | Metagenome / Metatranscriptome | 542 | Y |
| F028149 | Metagenome / Metatranscriptome | 192 | N |
| F083941 | Metagenome / Metatranscriptome | 112 | N |
| F085631 | Metagenome / Metatranscriptome | 111 | Y |
| F090287 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_1001326110 | F090287 | AGGAGG | MPALTSQEIASLSGCFDCLSPGIKETYMVTLLNQILAAAPGAPLTTTSPGGLLTATATSAANPLRRKFTLQNQKNEELFVKFGTGATTTDYHIVLPAHNTGSKHSDPLMLDGYIGAISVAATTGSPSYTFAQFV |
| Ga0315907_1001326112 | F028149 | AGGAG | MANGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELSSSLLGGNAFACALGLPAINFSWVGAGYVTLRVTDNAAAPITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLQKTNATLYDAWRFGVFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNPTATPGNYTLVLPYKNVAATEGIKSVFNEDYDNAHYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCVEIIPVCEPDAESYAAQNYNSADPVCPSVIQFTAIANDAGAYVIGTTGILCDGNIVTNAGISVATPALLVAALQSAWDTEFGAGQGTWTVVSGTLIQLAGSSCTNVTLEFAI |
| Ga0315907_1001326113 | F085631 | N/A | MKNTIRVSYRLPIEVAKMLEEEAIRSRRTKTAVLIIAIEDHVLQCENERSEWMQKPVDIKKKR |
| Ga0315907_100132615 | F002621 | N/A | MRPNLSRLIWLIVLPICLGCRTKVILVPNGDPVLLAEPVRASVYAFDRDGKLSGPSTVKIPAGWYALPKAK |
| Ga0315907_100132617 | F083941 | N/A | MPEENLHNLEVRIVRLETIIGDKDAGVVSDIHGIKATLEGLKQFQWKLFGGLGVLVVLAQLIGRIGLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |