NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10001403

Scaffold Ga0315907_10001403


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10001403 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32570
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (55.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013885Metagenome / Metatranscriptome267Y
F019996Metagenome / Metatranscriptome226Y
F024771Metagenome204N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000140316F013885AGGAGMLNYSDIKNYWTKFYADAFEDAKSFWKNYLDTVQNIYKK
Ga0315907_1000140324F024771GAGMNDKKYIENFNHESYENRTKNYLNISEDRFVQYCTSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKSFPDYFVYAPKEAYKQEQFFVELKNATWEQGKTLAKIKVRDIKRYIYFEQSFTNYHTRFTICFPLADKILFRSVDQILKLLPKSQLKCFPNDNIEYFEVQLN
Ga0315907_1000140353F019996AGAAGMSKCIFCKRLMINKLEQHIKACHKCIIDLLSKRHNLKVKRQAPISINTKKYEKI
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