NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318502_10318402

Scaffold Ga0318502_10318402


Overview

Basic Information
Taxon OID3300031747 Open in IMG/M
Scaffold IDGa0318502_10318402 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)917
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002442Metagenome / Metatranscriptome559Y
F064756Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0318502_103184022F002442GGAGMNPPFEFAAAIVLPIAAVYSLIGGARLVKWLSEQQSRPQAPEPIEQLRAHLVRLRAQLEDMETRSDQPAKNLRIRALRAAYVDALIEACQRLDVTPPVGARARPEIVKQSDIYRMEAALRERGLDVRETAAP
Ga0318502_103184023F064756N/AVVLVLAVSDEVDHARYTDVRAVREARLICCGALPA

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