NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10201713

Scaffold Ga0315293_10201713


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10201713 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1635
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0315293_102017131F000710N/AMANNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLLLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRV
Ga0315293_102017132F006697N/AMANQVQKLSYVDSKLGVSLPGQQTTRVVYDSITPTVGQGFYEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQLIGSFGGATPALLSNHLNLNITVGNQVVLKDFDPSFNATNRGLAFDRLHSGLNDANNVEVRLLTEIVIPPQVNFKATLSISDGVNIIATDNITIIFKGYGRIFSAGNSF
Ga0315293_102017133F002259N/AMGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSQTTAALNHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFVPLAANGIAYSGIGLAGLSVKFDLVIGNKTVIKDASCEFGGEQAFYNDGAAASSVIDLEGAGILIPPQVEYFVVAKTYFGFSRVASSQRLGCYLFGTGALLNFNTTI
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