| Basic Information | |
|---|---|
| Taxon OID | 3300031746 Open in IMG/M |
| Scaffold ID | Ga0315293_10095131 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2536 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5395 | Long. (o) | -110.3891 | Alt. (m) | Depth (m) | 61 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000716 | Metagenome / Metatranscriptome | 923 | Y |
| F028489 | Metagenome / Metatranscriptome | 191 | Y |
| F059881 | Metagenome / Metatranscriptome | 133 | Y |
| F076942 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315293_100951311 | F076942 | GAG | MNSKVIVLAEETTGAVVNVSQNNSDFGYIRVQQVRTMIDDNGFLRRKPVSALIPGSVSELQETGFFAGQQLDGKIVVEESLEPFNDKTPERDLKIAGETGVVCTLGGLPIFRRTKFSFDSNGADTLIKHDNIQQLRAAYSAQNAKSAELQPNDDFSIGG |
| Ga0315293_100951312 | F000716 | N/A | MIKMEKLKQYVSHYQLHAGKTYMQYEQDKYSIYQNYLYKRAIYGLGSLSQQELATICSKKKQRINNVYKRAQTVLNTLKQKLTIKYSNDIFQCLFPNSKMTQDILNYSDIDEKYKNTLTFKDLKVSKDDIIRIFIAEGILPKNFLSLENAPISLPSLKNESKA |
| Ga0315293_100951314 | F028489 | N/A | MKMIGKELKIKHTNSYSTFAVLPMNRGIDSKHVQKMIASLRIQGCLRVVICCRTNIIEGELKTYIIDGQHMATALEREGQPIPYIEIDIDSEEDLIKKMAYLNNSSKSWDMMNFINAWKMIRPDYMKLFKWNNMYDIEITMLAIIGVNNGAIKHSTGVVKTGNFKITNPKAEDMCKAFNDIFLKIGKSDRAVKFQFLNAFMQAYTPKYDHTKTMVAIERHIKTVKLMAIGEETGAFIRKQIFKLPK |
| Ga0315293_100951315 | F059881 | N/A | MDRQEIQSEALAATDSKQRSSICLGTGVGKTLVGLNYIERNSTPLMKILVVAPK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |