NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307468_100508722

Scaffold Ga0307468_100508722


Overview

Basic Information
Taxon OID3300031740 Open in IMG/M
Scaffold IDGa0307468_100508722 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)957
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016984Metagenome243Y
F022452Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0307468_1005087222F016984AGGAGGMKDSHAPSREIRPRVPTELVSFDGAELLWINAILFVPAIFGVMFLPDLARAIVLSLMVAIIATYFILFAWARVHPTSTSAHLLERLHIAPPRKTRA
Ga0307468_1005087223F022452N/AMTGLVETIWLFIRAGESVRVIRAATPEGRARLLIYGPGNTQATHEFADGIACTQREAEIERELVADGFTLEQFTDRRSGLDRRSVPRGIERRRDA

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