NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307516_10018965

Scaffold Ga0307516_10018965


Overview

Basic Information
Taxon OID3300031730 Open in IMG/M
Scaffold IDGa0307516_10018965 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7139
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)47.5302Long. (o)-121.825Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003346Metagenome492Y
F024229Metagenome206N
F056199Metagenome137Y
F076663Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0307516_100189651F024229N/ATHFQEEMMARGLAIEHLEVDPVPEVADTCLGFTAVAMAEVFSELEKHDEEVGIWIPSSL
Ga0307516_100189652F003346GGAGVKTLEKRCLEMADRCEDLMRKYELMLRRTTQVEISVGILRSRFETYPPQQFDLTDVLDTPITLGSHVVASGPRTLEERIESGRDWEQWLASVEDIKEEERLVAEVKETAKAWVNSLVGDIDIAPK
Ga0307516_100189657F056199GGAMEVWIRKTEDKMDGVVPEVIDLTSEDREGEEAIGDVLGSPFLDLGPLNELEVTLGSHVLGPLSLTQILDSPEAASVEEIERAVTHMYTVGCDGLVASQ
Ga0307516_100189658F076663N/AMSAPLTSLPNPHKSTSPIAFVAVPDVRLLLWSYRVLRSLQSNLSSGKLIHQPYYRPVSALDQGYTHPLFLLGADHAFEWRSILHGFPLCIVTISINPLYHFPHPQLVVANSFTYQCPHLHLLHWDLTPEIPAKFSESIHQVNNYLEGDLTELFLHLNQFYYNYFLPISPYDRSPQSPLLPSEPPTTPFIPTIPVAKNPNTIPLVGQQ
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