NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307516_10015208

Scaffold Ga0307516_10015208


Overview

Basic Information
Taxon OID3300031730 Open in IMG/M
Scaffold IDGa0307516_10015208 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8105
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)47.5302Long. (o)-121.825Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056199Metagenome137Y
F083465Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0307516_100152082F083465AGGAGMEVAQGAFEQVVVDLGVEMNHDVLGCRDCHGEGRDIIYCRHSQHNQEHAYHECPIGQECC
Ga0307516_100152085F056199AGTAGGMEVWMRKVQDKMDGVVPEVIDLTSEDGEGKEAIGDVLGSPFLDLGPLDGSEATLGSHVLGPLSLTQILDSPEMASAEEIERVVIRLTTGSLVKPVGED
Ga0307516_100152087F083465AGGAGMEAAQGAFEQTVRELGVEMNHDMLGCHDCHWEGRDIIYCRHSRHNREHAYHECPIGQECC
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