NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306917_11221046

Scaffold Ga0306917_11221046


Overview

Basic Information
Taxon OID3300031719 Open in IMG/M
Scaffold IDGa0306917_11221046 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)583
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024235Metagenome206Y
F044330Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0306917_112210461F044330AGGAGMIARLNRPLVMGLLPVTLIACMNSPPTSAEPGAAVPLGID
Ga0306917_112210462F024235AGGMNVRREIGRRDAERGGNVDGRAAAEAVAAARKPVVVAMLMGRRFIVVVLFGTGLVVSAVQMKRGMGVAARESERQQH

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