| Basic Information | |
|---|---|
| Taxon OID | 3300031718 Open in IMG/M |
| Scaffold ID | Ga0307474_10028703 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4072 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000688 | Metagenome / Metatranscriptome | 937 | Y |
| F008511 | Metagenome / Metatranscriptome | 332 | Y |
| F016091 | Metagenome / Metatranscriptome | 250 | Y |
| F053492 | Metagenome | 141 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307474_100287031 | F000688 | N/A | MTHFPQSNVNQRSPRVQLFGSVTAAVMAEGGQRARAKLQTISITGGLLQLQHELSTGDFVEIAFHTRSGAIRGMAEMLHPTRKYQSACLQPFRFIALGDDDHRKLRMALDSALDRRFLDPVSEQVRTPLGF |
| Ga0307474_100287033 | F008511 | AGGTGG | VSAPAPALAKPQRPAVVVRLADVSAVVASVSLIFGLLVVFFPVSFPRIIVASWQRGYLVLVMMVLALALDTFLYLRISYLRSSKPTVLVAACLGSLPIIIVGGLSFLLGSTVTQTLSLDLPNLQARVNEEILAHTYLGLVSAVFLPFLVIRLLQQFKPRS |
| Ga0307474_100287034 | F016091 | GGAG | MSVKWLVWIGLYLVMGVLVPWATALSWAHQHGSELRPRVRQLFQRGELGLVGLVVVISVIWNLLQSQFMQQTIAVAAVLLALVGTMAGDVWIEDYCRQSTGAASSPERTWRDSRNLAFLVFSMAIVVEILLDRFAKVAAL |
| Ga0307474_100287036 | F053492 | AGG | MSAESHNGAKKVGAVIYLSTNRPLHLPDFLAEFHQSWPHLLLQKTGREPHRALFRVGKSDFALELHHAPVPQEVTGPVVHSSLRWPTADAVLAGHQAHLSVAESAENSGVLSLACDLTKAIAALLPVTDSLAVCWLNGPVLNSAENFVETAREMFGTGLYPLKLWVAARWDAEAGALHTKGMAQFGAPEICLSEQPNADPVMVDYLFHVAQSVLTLHHSIPDGKTMDSPQGKLKIETSGAPGRRILILQPAAPK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |