NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10000069

Scaffold Ga0307474_10000069


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10000069 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74893
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (70.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001348Metagenome / Metatranscriptome717Y
F008761Metagenome / Metatranscriptome328Y
F010569Metagenome / Metatranscriptome302Y
F029194Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_1000006913F001348GAGMFVTTEQKVLQSVAVQLMNGEAVVLEDQKLRVKHVGNGRLRMVQFKLNGRIFEAIEQNREKPSRWGQLAREKHQVVQFRDVETHKYVAVAVDGEITEYGR
Ga0307474_1000006919F029194AGGAGMYDNPPGSPWWSACKIELDIRNGEQIAAALSATSHVLEKLRGSTQHFEQLAETLHESTKEVIDMLAGTKEAGRRLEIAVYVTIGITLVQLFNLIFEVFRKR
Ga0307474_1000006921F010569GAGMVKAAPVNLTSRAPRVKLAGTVLSLVRLENGRQTRGKLHQLSITGGLLHLETPLDEGTKVEVLFHLGSSTVRTKARMLFPMWATQGYLQPFEFDELDEEDRCNLRVDLQRLLDCSGGVIVPAPEEDDETSSEMNR
Ga0307474_1000006941F008761N/AMIGEAHDILRTTKLPERRAERAYELLTAALHLADNLLEISPAAMLGKKGGKTTAKRGSEYFRELAAKRTTFKGGRPKKSASTN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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