NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318496_10034447

Scaffold Ga0318496_10034447


Overview

Basic Information
Taxon OID3300031713 Open in IMG/M
Scaffold IDGa0318496_10034447 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2571
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003245Metagenome / Metatranscriptome498Y
F004458Metagenome / Metatranscriptome437Y

Sequences

Protein IDFamilyRBSSequence
Ga0318496_100344471F003245N/AVGLATVPAQAEAATGGQAVSLGPPGTTTVEFRGRVTQSGSSGQSFTSYGYLIRASNAAQGDLFADTSLSESTALLTAYATGDLQARTVDMAVHSLDIVGTMTVYQRSQPGASFSDPSSFQVGVPVARYDMTLQDVLTVFAINTGLPTLTGDMLQTAAAKLSGPLAGQKFGRKGTRLRFFATGLGFKTDPAPNANLEIAGNWSIE
Ga0318496_100344473F004458N/AAGDSHEVVFWRPVSFGGPGNQSPEVMALTAAASAGQGRAMDGVPLDGLITRMLARSPFDYRVAAGDSEREIAYRLRGSAVLDRGWCTAGDLPGGMERDRYDDRAVQVIGWDGDVAMSTGRVVLPPGLPTEEACGIVVEPSGGVVDVGRMCVAPSHQGLEHAAFIGLMCRLYLVMREHGFRFACGMMSAPARAMMGLFGLQLEILGPERTYWNEPRVPVRFSLMSATRLLAGAPDQAAVPQAARTSAVFAPPKPKELDSA
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