NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_111054087

Scaffold Ga0310686_111054087


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_111054087 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1367
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014638Metagenome / Metatranscriptome261Y
F058302Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1110540871F058302AGGVKVVLCPGVNVTGGVIPEMLNPVPDSATTEIVALVPPV
Ga0310686_1110540872F014638AGGVGVAVNEAGVTAVPLKGIDRLGFDAFEVTVTVPGKEPADVGANVTVKVVVCPGVNVTGGVIPEMLNPVPDAATAEIVALALPVFLIVSV
Ga0310686_1110540873F058302AGGVPAEVGAKITAKVALCPAVNVTGGVIPEMLNPVPDAATAEIVALVPPVFVIVSVWLEVCPTAIFV
Ga0310686_1110540874F014638N/AMAKLGFDAFEVTVTVPGNVPADVGANFTVNVVLCPAVKVTGGVIPEMLNPVPDAATAETVALVPPVFVIVSVWLEVCPTVIFV
Ga0310686_1110540875F058302N/ATVKVALCPAVNVTGGVIPEMLNPVPDVATAEIVALVPPVFVIVSVWLGVCPTVIFV
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