NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_110502862

Scaffold Ga0310686_110502862


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_110502862 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27112
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F000912Metagenome / Metatranscriptome839Y
F064310Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_11050286217F064310N/AMRHVIPNPNKERTFIHVEADESASNSRAAGRAGASNYVYPERACDDGE
Ga0310686_11050286229F000912GGAGGMALDAFVRCTCIRDGKAKPHPFPDRLTFDAIGEPMLTGDPTEDEWEAHDHWISESCEHEGFILSFFLGNITKVGNLRSFLRHLQGKPGPRFPILLEKVLYDGTHTGDSIPIKESPALLKEVDTVLHSSDILAESEKEFFTNMKLLCEASIATGNPIMF
Ga0310686_1105028624F000238GAGMPPRPPRWSAIPVRVLLVTFIGTLLAFALSLLAGIIGTVVVSALRHIHPNLTVAYRQIALPAALVAGSIIFVLVLIMEIRHYRQSRTLAAIERLG
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