NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_108534468

Scaffold Ga0310686_108534468


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_108534468 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1365
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014638Metagenome / Metatranscriptome261Y
F058302Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1085344681F014638AGGVGEAVRTAGVPSAVPVSGIDKLGFDAFDVTITVPLNVVMLVGVKVTVNVVLCPGVNVTGGVIPEMLNPVPDSAT
Ga0310686_1085344682F014638N/AVAGVTAVPLKGIDKLGFDAFEVTATVPGKEPAEVGANVTVKVVLCPGVNVTGGVIPEMLNPVPDSATTEIVALVPPVFWIVSV
Ga0310686_1085344683F014638N/AVAGVTAVPLKGIDKLGFDAFEVTVTVPGKEPADVGANVTVNVVLCPAVNVTGGVIPEMLNPVPDAPTAEIVALAPPVFLIVSV
Ga0310686_1085344684F014638N/AMAKLGFDAFEVTVAVPGNVPAEVGANVTVNVVLCPAVNVTGGVIPETVNPAPDSPTAEIVALVPPVLVIVSVWIEVCPTVMFV
Ga0310686_1085344685F058302N/AVPAEVGAKITVKVALCPAVNVTGGVIPEMLNPVPDAATAEIVTLVPPVFVIVSVWLDVCPTVIFV
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