NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_105631439

Scaffold Ga0310686_105631439


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_105631439 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4048
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002101Metagenome / Metatranscriptome593Y
F004095Metagenome / Metatranscriptome453Y
F032747Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1056314391F032747N/AIERKQVDWANAGRSEHVVENTLASRTLTRLPGEVFA
Ga0310686_1056314394F002101AGGAGMTTPVLALPLPLPDGSPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINVAGEPESRDKFCTDIRSATPPQRIAFFVGGPEYLAAVPHSDDGPAEPDADALHKEMVAALLAQASASSSQRWGILEACRKISSVRSVSEARSRAIRETPRPSRWAEAIEQHSAPEAANPQPLFATAAERELL
Ga0310686_1056314395F004095AGGAGMSGVNGDKARFNRRRRQKISRRLSNEKMLKTLAEQHLVAPAKPANLKEKSA
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