NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_103649475

Scaffold Ga0310686_103649475


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_103649475 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2132
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001535Metagenome / Metatranscriptome675Y
F001851Metagenome / Metatranscriptome626Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1036494751F000042AGGAGMRSIKFLVKVNRGGARAPQYVQRVDSTPIHMTTNRKLAQLMGRFTAEDAIKSLQNSRCIPELESVRVA
Ga0310686_1036494752F001851AGAAGGMNVTSISIGLLIVLFTLLLLTWIRKLNPQATGFRSQRMCPSCGLITARLNPRCLECGVASGSKRQM
Ga0310686_1036494753F001535GAGGMETPSDRTAEPNPAAAAVHITSAQSILKALQHKIGEHPEIGVVITKLEMALNALAIQTGGLL
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