NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318560_10125707

Scaffold Ga0318560_10125707


Overview

Basic Information
Taxon OID3300031682 Open in IMG/M
Scaffold IDGa0318560_10125707 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1344
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046353Metagenome / Metatranscriptome151Y
F054319Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0318560_101257071F046353N/ADVVAPSWISSFVPNLEAEFGLALMFASMIPIYWRAGRKRP
Ga0318560_101257073F054319N/APSVDRRHSSSVGMEDARAFVPAAKALSRLYEEGIAGMLTMIKASLLGSALMLLASCTDYLTNYQTPCVQGHVCECVRYTTLNRSWLDCRDYGRVKSRAY

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