NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318555_10251865

Scaffold Ga0318555_10251865


Overview

Basic Information
Taxon OID3300031640 Open in IMG/M
Scaffold IDGa0318555_10251865 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016843Metagenome244Y
F060639Metagenome132Y
F062392Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0318555_102518651F060639GGAMTLFFVRWPMQVEADVADRHLTGPHCADDWESFDGPDRAIIGRTGRQRRCPACGLCIDWPEATNAV
Ga0318555_102518652F016843AGGAGMPRYIIERQYLLPVYQHLAIEAPDLDTACREALDDGEHDWENAQEDYESSRPATIISAVEIAGEEQWAIATKSQYERSGLMYDGRHELIEIPREFTERDPLVELAEILERNDCGKARVLIDGDDLKRLKSMAGMGIDR
Ga0318555_102518653F062392N/AGRNAYIGTTGINVVDLGEELFLEPITTRGINSEACRIVLPKSAITALIEALADFAPGSRHSLPRKGPLEQGLDHLSTRTRGAAAAAE
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