NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10164726

Scaffold Ga0307376_10164726


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10164726 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019836Metagenome / Metatranscriptome227Y
F032660Metagenome / Metatranscriptome179Y
F062159Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0307376_101647262F019836N/AMQKAELELPVKQFHRLYDLLGDLIDYEAEINVFNMENNDIEFLEDIRYELFNQIPDEKTYTDYAITGRSSNPSIQAGKLYKIVEKTSKYGFKLEVEDGEVIYCLFKNCAFLNGRDWTIINVEN
Ga0307376_101647264F062159N/AMKNLTEEYVNIDWSGICSDFDLDHGDISPDQAFEMDRLLGNINEILHAFINQNK
Ga0307376_101647266F032660N/AMIQELDKVVHQWCDSNDRWMYIEYDRDGMVMGLNFMQGDEYECFKKDWCVSDKGLTAFYKQMLYTFAYEQRNVPEHAFINSCMWSYH
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