NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10016624

Scaffold Ga0307376_10016624


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10016624 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5909
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003962Metagenome / Metatranscriptome459Y
F011649Metagenome288Y
F019450Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0307376_100166241F011649AGGMEESGASPSAVEKGKNGRDIFTDKIADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLQVTQDHTHNLGGNLAQLLAGIRGRKQAQVIDAEVVKPKALPTIRDNSYCATDSVQPIVTTTPKVLGKTRHRRMRMRKP
Ga0307376_100166243F019450GGAMTYYAVYNSVGQFFARFTSYARALRWAVRNGMEWSADIRKEKENTK
Ga0307376_100166248F003962AGGVGLPLDREQLKLAHKFIGLLQAENAQLHSVLRLLGQLVDDMGNNCSYEVFEAQWNGLTERVKGLSGFFESHQKALQSLQDACPDEFDTDEVDES
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